MPEP § 2413.03 — How to Submit the “Sequence Listing XML” (Annotated Rules)

§2413.03 How to Submit the “Sequence Listing XML”

USPTO MPEP version: BlueIron's Update: 2026-01-17

This page consolidates and annotates all enforceable requirements under MPEP § 2413.03, including statutory authority, regulatory rules, examiner guidance, and practice notes. It is provided as guidance, with links to the ground truth sources. This is information only, it is not legal advice.

How to Submit the “Sequence Listing XML”

This section addresses How to Submit the “Sequence Listing XML”. Primary authority: 35 U.S.C. 111(a), 37 CFR 1.834, and 37 CFR 1.831. Contains: 2 requirements, 4 guidance statements, 3 permissions, and 4 other statements.

Key Rules

Topic

Sequence Listing Format

8 rules
StatutoryRequiredAlways
[mpep-2413-03-a5c9a46b4550cbab31771062]
Sequence Listing XML Must Be Submitted Electronically Or On Optical Discs
Note:
The 'Sequence Listing XML' must be submitted as a single file electronically via the USPTO system or on read-only optical discs in compliance with specific requirements.
(b) The “Sequence Listing XML” must be in a single file containing the sequence information and be submitted either:
  • (1) Electronically via the USPTO patent electronic filing system, where the file size must not exceed 100 MB, and file compression is not permitted; or
  • (2) On read-only optical disc(s) in compliance with § 1.52(e), where:
    • (i) A file that is not compressed must be contained on a single read-only optical disc;
    • (ii) The file may be compressed using WinZip ®, 7-Zip, or Unix ® /Linux ® Zip;
    • (iii) A compressed file must not be self-extracting; or
    • (iv) A compressed XML file that does not fit on a single read-only optical disc may be split into multiple file parts, in accordance with the target read-only optical disc size, and labeled in compliance with § 1.52(e)(5)(vi);
37 CFR 1.77 · 37 CFR 1.834Sequence Listing FormatSequence Listing RequirementsSequence Listing Content
StatutoryInformativeAlways
[mpep-2413-03-1d62960d8f6160a18a3e34ad]
Preferred Method for Sequence Listing XML Submission
Note:
For submissions up to 100MB, use the USPTO Patent Center system. Larger files can be submitted on physical media.

For submission of a “Sequence Listing XML” that is 100MB in size or less, the preferred method of submission is via the USPTO patent electronic filing system. Only the Patent Center system of the USPTO patent electronic filing system is capable of accepting.xml files. If the “Sequence Listing XML” is larger than 100MB in size, then applicant may submit the.xml file on physical media using read-only optical discs (CDs or DVDs). “Sequence Listing XML” submissions on discs may be compressed if the resulting compressed file is non-self-extracting.

Jump to MPEP Source · 37 CFR 1.834Sequence Listing FormatSequence Listing RequirementsSequence Listing Content
StatutoryInformativeAlways
[mpep-2413-03-bb920e69009d09157ddee575]
Patent Center System Only Accepts Sequence Listing XML Files
Note:
The USPTO Patent Center system is the only method for submitting sequence listing xml files up to 100MB. Larger files must be submitted on physical media.

For submission of a “Sequence Listing XML” that is 100MB in size or less, the preferred method of submission is via the USPTO patent electronic filing system. Only the Patent Center system of the USPTO patent electronic filing system is capable of accepting.xml files. If the “Sequence Listing XML” is larger than 100MB in size, then applicant may submit the.xml file on physical media using read-only optical discs (CDs or DVDs). “Sequence Listing XML” submissions on discs may be compressed if the resulting compressed file is non-self-extracting.

Jump to MPEP Source · 37 CFR 1.834Sequence Listing FormatSequence Listing ContentSequence Listing Requirements
StatutoryPermittedAlways
[mpep-2413-03-d01e4e8bcf8cdf091c365c5c]
Large Sequence Listing XML Submission via Physical Media
Note:
If the 'Sequence Listing XML' exceeds 100MB, applicants may submit it on read-only optical discs (CDs or DVDs).

For submission of a “Sequence Listing XML” that is 100MB in size or less, the preferred method of submission is via the USPTO patent electronic filing system. Only the Patent Center system of the USPTO patent electronic filing system is capable of accepting.xml files. If the “Sequence Listing XML” is larger than 100MB in size, then applicant may submit the.xml file on physical media using read-only optical discs (CDs or DVDs). “Sequence Listing XML” submissions on discs may be compressed if the resulting compressed file is non-self-extracting.

Jump to MPEP Source · 37 CFR 1.834Sequence Listing FormatSequence Listing RequirementsSequence Listing Content
StatutoryPermittedAlways
[mpep-2413-03-31f7b427921cd510b9ab71c1]
Compression Allowed for Sequence Listings on Discs
Note:
Compressed XML files are permitted for submission via physical media if they are non-self-extracting and the listing is 100MB or less.

For submission of a “Sequence Listing XML” that is 100MB in size or less, the preferred method of submission is via the USPTO patent electronic filing system. Only the Patent Center system of the USPTO patent electronic filing system is capable of accepting.xml files. If the “Sequence Listing XML” is larger than 100MB in size, then applicant may submit the.xml file on physical media using read-only optical discs (CDs or DVDs). “Sequence Listing XML” submissions on discs may be compressed if the resulting compressed file is non-self-extracting.

Jump to MPEP Source · 37 CFR 1.834Sequence Listing FormatSequence Listing RequirementsSequence Listing Content
StatutoryInformativeAlways
[mpep-2413-03-9f4a0fe5a1507faff3a00e5d]
XML Required for Sequence Listings After July 1, 2022
Note:
Applicants must submit a 'Sequence Listing XML' instead of a traditional 'Sequence Listing' in patent applications filed on or after July 1, 2022.

The USPTO patent electronic filing system will prohibit an applicant from submitting both a “Sequence Listing XML” (a sequence listing that conforms to WIPO Standard ST.26 as implemented in 37 CFR 1.831 through 1.835) and a “Sequence Listing” (a sequence listing that conforms to ST.25 as implemented in 37 CFR 1.821 through 1.825) in the same submission. Filing a “Sequence Listing” in a 35 U.S.C. 111(a) application having a filing date on or after July 1, 2022, will result in a notice from the Office of Patent Application Processing (OPAP) informing applicant that the submission fails to comply with 37 CFR 1.831 through 1.834 and will require submission of a “Sequence Listing XML.” See MPEP § 2415.03 for addressing improper submission of a “Sequence Listing” that complies with 37 CFR 1.821 – 1.824 where a “Sequence Listing XML” that complies with 37 CFR 1.831 – 1.834 is required in a national nonprovisional application.

Jump to MPEP Source · 37 CFR 1.831Sequence Listing FormatSequence Listing RequirementsSequence Listing Content
StatutoryRequiredAlways
[mpep-2413-03-a00d395858e5adf7b975dc2b]
Sequence Listing XML Required for Filing After July 1, 2022
Note:
Applicants must submit a Sequence Listing XML in patent applications filed on or after July 1, 2022, instead of the previous Sequence Listing format.

The USPTO patent electronic filing system will prohibit an applicant from submitting both a “Sequence Listing XML” (a sequence listing that conforms to WIPO Standard ST.26 as implemented in 37 CFR 1.831 through 1.835) and a “Sequence Listing” (a sequence listing that conforms to ST.25 as implemented in 37 CFR 1.821 through 1.825) in the same submission. Filing a “Sequence Listing” in a 35 U.S.C. 111(a) application having a filing date on or after July 1, 2022, will result in a notice from the Office of Patent Application Processing (OPAP) informing applicant that the submission fails to comply with 37 CFR 1.831 through 1.834 and will require submission of a “Sequence Listing XML.” See MPEP § 2415.03 for addressing improper submission of a “Sequence Listing” that complies with 37 CFR 1.821 – 1.824 where a “Sequence Listing XML” that complies with 37 CFR 1.831 – 1.834 is required in a national nonprovisional application.

Jump to MPEP Source · 37 CFR 1.831Sequence Listing FormatSequence Listing RequirementsSequence Listing Content
StatutoryRecommendedAlways
[mpep-2413-03-b651c81859453f12e1a779e5]
Mark Discs 'Mail Stop SEQUENCE'
Note:
All read-only optical discs, fees, and papers related to sequence listings must be marked ‘Mail Stop SEQUENCE’ for administrative processing.

To facilitate administrative processing of all papers and read-only optical discs associated with sequence rule compliance, all read-only optical discs, fees, and papers accompanying them filed in the Office should be marked “Mail Stop SEQUENCE.” Correspondence relating to the submission of a “Sequence Listing XML” may also be hand-delivered to the Customer Service Window. In cases of hand delivery to the Customer Service Window, the read-only optical disc enclosed in a hard case should be placed in a protective mailer. The use of staples and clips, if any, should be confined to carefully attaching the protective mailer to the submitted papers without contact or compression of the media. The labeling requirements of 37 CFR 1.52(e) and including the application number (if known), apply to all read-only optical disc submissions. For submission of a “Sequence Listing XML” larger than 100MB in size in a new application, it is recommended that the user file the application without the “Sequence Listing XML” using the USPTO patent electronic filing system to obtain the application number, and then file the “Sequence Listing XML” on read-only optical disc(s) in accordance with 37 CFR 1.52(e) on the same day by using Priority Mail Express® from the USPS in accordance with 37 CFR 1.10, or hand delivery, in order to secure the same filing date for all parts of the application. In no situations should additional or complimentary electronic copies be delivered to examiners or other Office personnel.

Jump to MPEP Source · 37 CFR 1.52(e)Sequence Listing FormatSequence Listing RequirementsSequence Listing Content
Topic

Sequence Listing Content

4 rules
StatutoryInformativeAlways
[mpep-2413-03-b59540eb517099ec92d1ec42]
How to Submit Sequence Listing XML for Filing
Note:
This rule outlines the requirements for submitting a sequence listing in XML format for applications filed on or after July 1, 2022.

[Editor Note: This section is applicable to all applications with a filing date, or, for national phase applications, an international filing date, on or after July 1, 2022, having disclosure of one or more nucleotide and/or amino acid sequences as defined in 37 CFR 1.831(b).]

37 CFR 1.77 · 37 CFR 1.831(b)Sequence Listing ContentSequence Listing RequirementsSequence Listing Format
StatutoryRecommendedAlways
[mpep-2413-03-39e1c7b5fe2fd51c7774e966]
Read-Only Optical Disc Must Be Placed In Protective Mailer
Note:
When hand-delivering a read-only optical disc to the Customer Service Window, it must be enclosed in a hard case and placed inside a protective mailer.

To facilitate administrative processing of all papers and read-only optical discs associated with sequence rule compliance, all read-only optical discs, fees, and papers accompanying them filed in the Office should be marked “Mail Stop SEQUENCE.” Correspondence relating to the submission of a “Sequence Listing XML” may also be hand-delivered to the Customer Service Window. In cases of hand delivery to the Customer Service Window, the read-only optical disc enclosed in a hard case should be placed in a protective mailer. The use of staples and clips, if any, should be confined to carefully attaching the protective mailer to the submitted papers without contact or compression of the media. The labeling requirements of 37 CFR 1.52(e) and including the application number (if known), apply to all read-only optical disc submissions. For submission of a “Sequence Listing XML” larger than 100MB in size in a new application, it is recommended that the user file the application without the “Sequence Listing XML” using the USPTO patent electronic filing system to obtain the application number, and then file the “Sequence Listing XML” on read-only optical disc(s) in accordance with 37 CFR 1.52(e) on the same day by using Priority Mail Express® from the USPS in accordance with 37 CFR 1.10, or hand delivery, in order to secure the same filing date for all parts of the application. In no situations should additional or complimentary electronic copies be delivered to examiners or other Office personnel.

Jump to MPEP Source · 37 CFR 1.52(e)Sequence Listing ContentSequence Listing FormatSequence Listing Requirements
StatutoryRecommendedAlways
[mpep-2413-03-6dd3a549eafae08cf31dcaf8]
Protective Mailer for Sequence Listing XML
Note:
Staples and clips must be used to attach the protective mailer to submitted papers without contacting or compressing the media.

To facilitate administrative processing of all papers and read-only optical discs associated with sequence rule compliance, all read-only optical discs, fees, and papers accompanying them filed in the Office should be marked “Mail Stop SEQUENCE.” Correspondence relating to the submission of a “Sequence Listing XML” may also be hand-delivered to the Customer Service Window. In cases of hand delivery to the Customer Service Window, the read-only optical disc enclosed in a hard case should be placed in a protective mailer. The use of staples and clips, if any, should be confined to carefully attaching the protective mailer to the submitted papers without contact or compression of the media. The labeling requirements of 37 CFR 1.52(e) and including the application number (if known), apply to all read-only optical disc submissions. For submission of a “Sequence Listing XML” larger than 100MB in size in a new application, it is recommended that the user file the application without the “Sequence Listing XML” using the USPTO patent electronic filing system to obtain the application number, and then file the “Sequence Listing XML” on read-only optical disc(s) in accordance with 37 CFR 1.52(e) on the same day by using Priority Mail Express® from the USPS in accordance with 37 CFR 1.10, or hand delivery, in order to secure the same filing date for all parts of the application. In no situations should additional or complimentary electronic copies be delivered to examiners or other Office personnel.

Jump to MPEP Source · 37 CFR 1.52(e)Sequence Listing ContentSequence Listing FormatSequence Listing Requirements
StatutoryRecommendedAlways
[mpep-2413-03-bfe41b75cb97ba5833b39929]
No Complimentary Electronic Copies for Examiners
Note:
All electronic copies must be submitted through official channels and not delivered to examiners directly.

To facilitate administrative processing of all papers and read-only optical discs associated with sequence rule compliance, all read-only optical discs, fees, and papers accompanying them filed in the Office should be marked “Mail Stop SEQUENCE.” Correspondence relating to the submission of a “Sequence Listing XML” may also be hand-delivered to the Customer Service Window. In cases of hand delivery to the Customer Service Window, the read-only optical disc enclosed in a hard case should be placed in a protective mailer. The use of staples and clips, if any, should be confined to carefully attaching the protective mailer to the submitted papers without contact or compression of the media. The labeling requirements of 37 CFR 1.52(e) and including the application number (if known), apply to all read-only optical disc submissions. For submission of a “Sequence Listing XML” larger than 100MB in size in a new application, it is recommended that the user file the application without the “Sequence Listing XML” using the USPTO patent electronic filing system to obtain the application number, and then file the “Sequence Listing XML” on read-only optical disc(s) in accordance with 37 CFR 1.52(e) on the same day by using Priority Mail Express® from the USPS in accordance with 37 CFR 1.10, or hand delivery, in order to secure the same filing date for all parts of the application. In no situations should additional or complimentary electronic copies be delivered to examiners or other Office personnel.

Jump to MPEP Source · 37 CFR 1.52(e)Sequence Listing ContentSequence Listing FormatSequence Listing Requirements
Topic

Correspondence with the Office

1 rules
StatutoryPermittedAlways
[mpep-2413-03-3d7939ef8b6c99b1efbdb982]
Hand Delivery to Customer Service Window for Sequence Listing XML
Note:
Correspondence regarding the submission of a 'Sequence Listing XML' may be hand-delivered to the Customer Service Window.

To facilitate administrative processing of all papers and read-only optical discs associated with sequence rule compliance, all read-only optical discs, fees, and papers accompanying them filed in the Office should be marked “Mail Stop SEQUENCE.” Correspondence relating to the submission of a “Sequence Listing XML” may also be hand-delivered to the Customer Service Window. In cases of hand delivery to the Customer Service Window, the read-only optical disc enclosed in a hard case should be placed in a protective mailer. The use of staples and clips, if any, should be confined to carefully attaching the protective mailer to the submitted papers without contact or compression of the media. The labeling requirements of 37 CFR 1.52(e) and including the application number (if known), apply to all read-only optical disc submissions. For submission of a “Sequence Listing XML” larger than 100MB in size in a new application, it is recommended that the user file the application without the “Sequence Listing XML” using the USPTO patent electronic filing system to obtain the application number, and then file the “Sequence Listing XML” on read-only optical disc(s) in accordance with 37 CFR 1.52(e) on the same day by using Priority Mail Express® from the USPS in accordance with 37 CFR 1.10, or hand delivery, in order to secure the same filing date for all parts of the application. In no situations should additional or complimentary electronic copies be delivered to examiners or other Office personnel.

Jump to MPEP Source · 37 CFR 1.52(e)Correspondence with the OfficeSequence Listing FormatSequence Listing Requirements
Topic

Identifying the Application

1 rules
StatutoryInformativeAlways
[mpep-2413-03-e913cd3037a8406d44ac845c]
Sequence Listing XML Must Be Filed Separately After Application Number Obtained
Note:
For large Sequence Listing XML submissions, file the application first without it and then submit the XML on a read-only optical disc with the same filing date.

To facilitate administrative processing of all papers and read-only optical discs associated with sequence rule compliance, all read-only optical discs, fees, and papers accompanying them filed in the Office should be marked “Mail Stop SEQUENCE.” Correspondence relating to the submission of a “Sequence Listing XML” may also be hand-delivered to the Customer Service Window. In cases of hand delivery to the Customer Service Window, the read-only optical disc enclosed in a hard case should be placed in a protective mailer. The use of staples and clips, if any, should be confined to carefully attaching the protective mailer to the submitted papers without contact or compression of the media. The labeling requirements of 37 CFR 1.52(e) and including the application number (if known), apply to all read-only optical disc submissions. For submission of a “Sequence Listing XML” larger than 100MB in size in a new application, it is recommended that the user file the application without the “Sequence Listing XML” using the USPTO patent electronic filing system to obtain the application number, and then file the “Sequence Listing XML” on read-only optical disc(s) in accordance with 37 CFR 1.52(e) on the same day by using Priority Mail Express® from the USPS in accordance with 37 CFR 1.10, or hand delivery, in order to secure the same filing date for all parts of the application. In no situations should additional or complimentary electronic copies be delivered to examiners or other Office personnel.

Jump to MPEP Source · 37 CFR 1.52(e)Identifying the ApplicationExpress Mail Filing DateDocuments Excluded from Certificate Practice

Citations

Primary topicCitation
Sequence Listing Format35 U.S.C. § 111(a)
Correspondence with the Office
Identifying the Application
Sequence Listing Content
Sequence Listing Format
37 CFR § 1.10
Correspondence with the Office
Identifying the Application
Sequence Listing Content
Sequence Listing Format
37 CFR § 1.52(e)
Sequence Listing Format37 CFR § 1.52(e)(5)(vi)
Sequence Listing Format37 CFR § 1.821
Sequence Listing Format37 CFR § 1.831
Sequence Listing Content37 CFR § 1.831(b)
Sequence Listing FormatMPEP § 2415.03

Source Text from USPTO’s MPEP

This is an exact copy of the MPEP from the USPTO. It is here for your reference to see the section in context.

BlueIron Last Updated: 2026-01-17