MPEP § 2417 — Helpful Hints for Sequence Rules Compliance under WIPO Standard ST.26 (Annotated Rules)

§2417 Helpful Hints for Sequence Rules Compliance under WIPO Standard ST.26

USPTO MPEP version: BlueIron's Update: 2025-12-31

This page consolidates and annotates all enforceable requirements under MPEP § 2417, including statutory authority, regulatory rules, examiner guidance, and practice notes. It is provided as guidance, with links to the ground truth sources. This is information only, it is not legal advice.

Helpful Hints for Sequence Rules Compliance under WIPO Standard ST.26

This section addresses Helpful Hints for Sequence Rules Compliance under WIPO Standard ST.26. Contains: 8 requirements, 2 prohibitions, and 2 permissions.

Key Rules

Topic

Sequence Listing Format

10 rules
StatutoryInformativeAlways
[mpep-2417-a602cd46d7d1107cddb0b4f6]
Tips for Sequence Listing Compliance under WIPO Standard ST.26
Note:
Provides non-exhaustive guidance on complying with sequence listing rules as per WIPO Standard ST.26, implemented by U.S. regulations.

The Office has the following non-exhaustive tips regarding sequence rules in compliance with WIPO Standard ST.26, as incorporated by reference in 37 CFR 1.839 and implemented by 37 CFR 1.831 – 1.835.

Jump to MPEP Source · 37 CFR 1.839Sequence Listing FormatSequence Listing Requirements
StatutoryRequiredAlways
[mpep-2417-c1a66a52418cb3242395f231]
Filing Date Not Dependent on Compliance
Note:
The filing date can be established without meeting specific compliance requirements.

—Compliance is not required for establishing a filing date.

Jump to MPEP SourceSequence Listing FormatSequence Listing Requirements
StatutoryInformativeAlways
[mpep-2417-9cc0f3d0edb810bb99fa26c8]
Sequence Listing Is Part of Specification
Note:
A sequence listing submitted with a new application in compliance with 37 CFR 1.831 – 1.834 is considered part of the specification and contributes to disclosing the invention for the purpose of 35 U.S.C. 112.

─ A sequence listing submitted with a new application in compliance with 37 CFR 1.831 – 1.834 is considered part of the specification and thus contributes to disclosure of the invention for the purpose of 35 U.S.C. 112.

Jump to MPEP Source · 37 CFR 1.831Sequence Listing FormatSequence Listing RequirementsPatent Application Content
StatutoryInformativeAlways
[mpep-2417-a0d2df4adca05548834114c1]
Initial Sequence Listings Must Comply Under MPEP §2414.02
Note:
The rule requires initial sequence listings to comply with the provisions outlined in MPEP §2414.02, ensuring proper submission under 37 CFR 1.835(a)(2)-(4).

—Compliance is not per se a new matter issue. See MPEP § 2414.02 for adding initial sequence listings under 37 CFR 1.835(a)(2) – (4) and MPEP § 2414.03 for amendments adding to, deleting from, or replacing sequence information under 37 CFR 1.835(b)(2) – (4).

Jump to MPEP Source · 37 CFR 1.835(a)(2)Sequence Listing FormatSequence Listing Requirements
StatutoryProhibitedAlways
[mpep-2417-ad53a596fd23137fe9f8a2b8]
Short Sequences Prohibited in XML Listing
Note:
Sequences shorter than 10 nucleotides or 4 amino acids are not allowed in the Sequence Listing XML.

─Sequences of <10 nucleotides and <4 amino acids are prohibited in a “Sequence Listing XML.”

Jump to MPEP SourceSequence Listing FormatSequence Listing Requirements
StatutoryPermittedAlways
[mpep-2417-586e53ab1454ed66fb81c011]
Sequence Identifier Format Permitted
Note:
The use of variations in 'SEQ ID NO:' format is allowed, but the sequence identifier must be clearly separated from the sequence shown in the specification.

─ Variations of “SEQ ID NO:” format (e.g. “Seq Id No.”) are permitted. Parentheses are NOT required; the sequence identifier, however, must be clearly separated from the sequence shown in the specification.

Jump to MPEP SourceSequence Listing FormatSequence Listing ContentSequence Listing Requirements
StatutoryRequiredAlways
[mpep-2417-103cf08769b4f3b6e8183976]
Sequence Listing XML Must Include Reference Statement
Note:
Each Sequence Listing XML filed in a 111(a) application must be accompanied by an incorporation by reference statement including the file name, creation date, and size in bytes.

─ Each “Sequence Listing XML” filed in a 111(a) application must be accompanied by an incorporation by reference statement that includes the name of the file, the date of creation, and the size of the file in bytes.

Jump to MPEP SourceSequence Listing FormatSequence Listing Requirements
StatutoryRequiredAlways
[mpep-2417-d997fa873c0484f0fce7391c]
XML Filing After Filing Date Requires Statement and Support Identification
Note:
An added Sequence Listing XML filed after the application’s filing date must include a statement confirming no new matter has been introduced and identifying support for each sequence and associated data within the application as originally filed.

─ An added “Sequence Listing XML” filed after the filing date of the application must be accompanied by a statement: • indicating that no new matter has been introduced; AND • identifying the support for each new sequence and sequence-associated data within the application as filed.

Jump to MPEP SourceSequence Listing FormatSequence Listing Requirements
StatutoryRequiredAlways
[mpep-2417-279e48cc9739128f876212fa]
Amended Sequence Listing XML Must Accompany Statement
Note:
An amended sequence listing XML must be accompanied by a statement indicating no new matter has been introduced, identifying changes relative to the original listing, and providing support for the changes within the application as filed.

─ An amended “Sequence Listing XML,” including one submitted to address a defective sequence listing (validated as CRFD), must be accompanied by a statement: • indicating that no new matter has been introduced; • identifying the locations of additions, deletions or replacements of sequence information relative to the replaced listing; AND • identifying the support for the additions, deletions or replacements of sequence information within the application as filed.

Jump to MPEP SourceSequence Listing FormatSequence Listing Requirements
StatutoryProhibitedAlways
[mpep-2417-ea01c516106b9482e18d934d]
Sequences Not for XML Listing May Be Described
Note:
Sequences that cannot be included in the Sequence Listing XML can still be presented in the description but must not be associated with a sequence identification number.

─ Sequences that are prohibited from inclusion in a “Sequence Listing XML” may be presented within the description, but should not be associated with a sequence identification number.

Jump to MPEP SourceSequence Listing FormatSequence Listing Requirements
Topic

Sequence Listing Content

6 rules
StatutoryInformativeAlways
[mpep-2417-8fb7add11c656e8e9c9e114f]
Disclosure of Nucleotide and Amino Acid Sequences Required for Filing on or After July 1, 2022
Note:
All applications filed on or after July 1, 2022, must disclose one or more nucleotide and/or amino acid sequences as defined in 37 CFR 1.831(b).

[Editor Note: This section is applicable to all applications with a filing date, or, for national phase applications, an international filing date, on or after July 1, 2022, having disclosure of one or more nucleotide and/or amino acid sequences as defined in 37 CFR 1.831(b).]

37 CFR 1.77 · 37 CFR 1.831(b)Sequence Listing ContentSequence Listing RequirementsSequence Listing Format
StatutoryRequiredAlways
[mpep-2417-2bfed019417709ed0da10c52]
Amino Acid Sequences Including D-Aminos and Modified Aminos Required in XML Listing
Note:
The rule requires that amino acid sequences, including those with D-amino acids, modified amino acids, and linear portions of branched sequences, must be included in the Sequence Listing XML.

─ Amino acid sequences required to be included in a “Sequence Listing XML” include those comprising D-amino acids, modified amino acids and linear portions of branched sequences.

Jump to MPEP SourceSequence Listing ContentSequence Listing FormatSequence Listing Requirements
StatutoryRequiredAlways
[mpep-2417-6ea7edd4bcc5cb7c3eef175c]
Modified Nucleotides and Branched Sequences Required in XML
Note:
Nucleotide sequences including modified nucleotides, analogs, and linear portions of branched sequences must be included in the Sequence Listing XML.

─ Nucleotide sequences required to be included in a “Sequence Listing XML” include those comprising modified nucleotides, nucleotide analogs and linear portions of branched sequences.

Jump to MPEP SourceSequence Listing ContentSequence Listing FormatSequence Listing Requirements
StatutoryRequiredAlways
[mpep-2417-3dfa8014e81134d0fe690b69]
Sequence Listing Must Use SEQ ID NO: Identifier
Note:
Each sequence in the XML listing must be identified with 'SEQ ID NO:' followed by a number.

─ Each sequence disclosed in the “Sequence Listing XML” must have its sequence identification number (identifier) associated with “SEQ ID NO:” or the like designator next to each occurrence within the disclosure, i.e. SEQ ID NO: X.

Jump to MPEP SourceSequence Listing ContentSequence Listing FormatSequence Listing Requirements
StatutoryRequiredAlways
[mpep-2417-da0bfe288eb9e832bae8077a]
Sequence Identifier Must Be Clearly Separated From Sequence
Note:
The sequence identifier, such as 'Seq Id No.', must be clearly separated from the sequence shown in the specification without using parentheses.

─ Variations of “SEQ ID NO:” format (e.g. “Seq Id No.”) are permitted. Parentheses are NOT required; the sequence identifier, however, must be clearly separated from the sequence shown in the specification.

Jump to MPEP SourceSequence Listing ContentSequence Listing FormatSequence Listing Requirements
StatutoryPermittedAlways
[mpep-2417-6cc3be91160e36ecf4516ccf]
Sequence Identifier Can Be In Figure Or Brief Description
Note:
A sequence identifier can be placed within the figure itself or in the Brief Description of the Drawings, but not both is required.

─ Sequences in figures can have “SEQ ID NO:” or the like with the sequence identifier in the figure itself OR in the Brief Description of the Drawings, but it does not have to be in both places.

Jump to MPEP SourceSequence Listing ContentSequence Listing FormatSequence Listing Requirements
Topic

International Filing Date

1 rules
StatutoryInformativeAlways
[mpep-2417-d909ac76714c5de803f8a54d]
PCT Filing Date Controls Sequence Listing Submission
Note:
The international filing date (PCT filing date) is the controlling date for submitting a sequence listing in compliance with WIPO Standard ST.26 in national stage applications under 35 U.S.C. 371.

─ The international filing date (PCT filing date) is controlling for submission of a sequence listing in compliance with WIPO Standard ST.26 in 35 U.S.C. 371 (national stage) applications.

Jump to MPEP SourceInternational Filing DateNationals and ResidentsReceiving Office (RO/US)

Citations

Primary topicCitation
Sequence Listing Format35 U.S.C. § 112
International Filing Date35 U.S.C. § 371
Sequence Listing Format37 CFR § 1.831
Sequence Listing Content37 CFR § 1.831(b)
Sequence Listing Format37 CFR § 1.835(a)(2)
Sequence Listing Format37 CFR § 1.835(b)(2)
Sequence Listing Format37 CFR § 1.839
Sequence Listing FormatMPEP § 2414.02
Sequence Listing FormatMPEP § 2414.03

Source Text from USPTO’s MPEP

This is an exact copy of the MPEP from the USPTO. It is here for your reference to see the section in context.

BlueIron Last Updated: 2025-12-31